TrimAl

 

 TrimAl removes spurious sequences or poorly aligned from a MSA.

Documentation

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses.
Salvador Capella-Gutierrez; Jose M. Silla-Martinez; Toni Gabaldon. Bioinformatics 2009 25: 1972-1973.

 

Usage

To see what versions of trimAI are available type

module avail trimal

To see what other modules are needed, what commands are available and how to get additional help type

module help trimal

To use trimAl, include a command like this in your batch script or interactive session to load the trimal module:

module load trimal

Be sure you also load any other modules needed, as listed by the module help trimal command.

 

 

 

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