Filtlong
Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter.
Documentation
Usage on Bridges-2
To see what versions of Filtlong are available and if there is more than one, which is the default, along with some help, type
module spider filtlong
To use Filtlong, include a command like this in your batch script or interactive session to load the Filtlong module: (note ‘module load’ is case-sensitive):
module load filtlong