Transrate

 

Transrate is software for de novo transcriptome assembly quality analysis.

Documentation

Richard D Smith-Unna, Chris Boursnell, Rob Patro, Julian M Hibberd, Steven Kelly. (2016) TransRate: reference free quality assessment of de-novo transcriptome assemblies.  Genome Research  doi: http://dx.doi.org/10.1101/gr.196469.115

 

Usage

To see what versions of Transrate are available type

module avail transrate

To see what other modules are needed, what commands are available and how to get additional help type

module help transrate

To use Transrate, include a command like this in your batch script or interactive session to load the transrate module:

module load transrate

Be sure you also load any other modules needed, as listed by the module help transrate command.

 

 

 

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Send mail to remarks@psc.edu or call the PSC hotline: 412-268-6350.