Strelka

 

Strelka is an analysis package designed to detect somatic SNVs and small indels from the aligned sequencing reads of matched tumor-normal samples.

 

Documentation

 

Usage on Bridges

 

To see what versions of Strelka are available type

module avail strelka

To see what other modules are needed, what commands are available and how to get additional help type

module help  strelka

To use Strelka, include a command like this in your batch script or interactive session to load the Strelka module:

module load strelka

 

Be sure you also load any other modules needed, as listed by the module help strelka command.

 

User Information

Passwords
Connect to PSC systems:
Policies
Technical questions:

Send mail to remarks@psc.edu or call the PSC hotline: 412-268-6350.