STAR aligner

 

Spliced Transcripts Alignment to a Reference

Documentation

Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, Batut P, Chaisson M, Gingeras TR. . Bioinformatics. 2013 Jan 1;29(1):15-21. doi: 10.1093/bioinformatics/bts635

 

Usage

To see what versions of STAR aligner are available type

module avail staraligner

To see what other modules are needed, what commands are available and how to get additional help type

module help staraligner

To use STAR aligner, include a command like this in your batch script or interactive session to load the staraligner module:

module load staraligner

Be sure you also load any other modules needed, as listed by the module help staraligner command.

 

 

 

User Information

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Send mail to remarks@psc.edu or call the PSC hotline: 412-268-6350.