Prodigal

 

Prodigal (PROkaryotic DynamIc programming Genefinding ALgorithm) is an open source lightweight microbial genefinding program developed at University of Tennessee and Oak Ridge National Laboratory.

Documentation

  • http://prodigal.ornl.gov/
  • Reference: Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ, Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics11 (1):119 2010 Mar 8.

Usage

 

  • BioU

 

The Prodigal programs are availiable through the Galaxy instance on biou.

To make the Prodigal programs availiable through the command line, csh users should enter the following command:

source /packages/bin/SETUP_BIO_SOFTWARE

To make the Prodigal programs availiable through the command line, bash users should enter the following command:

 

See more help on Prodigal.

User Information

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Send mail to remarks@psc.edu or call the PSC hotline: 412-268-6350.