MetaPhlAn (METAgenomic PHyLogenetic ANalysis) is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data.
See also MetaPhlAn2, an update to MetaPhlAn which can identify specific strains and track strains across samples for all species.
To see what versions of MetaPhlAn are available type
module avail metaphlan
To see what other modules are needed, what commands are available and how to get additional help type
module help metaphlan
To use MetaPhlAn, include a command like this in your batch script or interactive session to load the metaphlan module:
module load metaphlan
Be sure you also load any other modules needed, as listed by the
module help metaphlan command.