MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data sets containing only short reads from Illumina sequencing or a mixture of short reads and long reads.
- MASuRCA web site
- Zimin, A. et al. The MaSuRCA genome Assembler. Bioinformatics (2013). doi:10.1093/bioinformatics/btt476
To see what versions of MaSuRCA are available type
module avail masurca
To see what other modules are needed, what commands are available and how to get additional help type
module help masurca
To use MaSuRCA, include a command like this in your batch script to load the MaSuRCA module:
module load masurca
Be sure you also load any other modules needed, as listed by the
module help masurca command.