Kallisto

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.

Documentation

Usage

To see what versions of kallisto are available type

module avail kallisto

To see what other modules are needed, what commands are available and how to get additional help type

module help kallisto

To use kallisto, include a command like this in your batch script or interactive session to load the kallisto module:

module load kallisto

Be sure you also load any other modules needed, as listed by the module help kallisto command.

 

User Information

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Send mail to remarks@psc.edu or call the PSC hotline: 412-268-6350.