EricScript

EricScript is a computational framework for the discovery of gene fusions in paired end RNA-seq data. It is able to generate synthetic gene fusions by using the EricScript simulator and calculate a number of statistical measures for evaluating gene fusion detection methods' performance with EricScript CalcStats.

 

Documentation

  • EricScript web site
  • Benelli M, Pescucci C, Marseglia G, Severgnini M, Torricelli F, Magi A. Discovering chimeric transcripts in paired-end RNA-seq data by using EricScript. Bioinformatics. 2012; 28(24): 3232-3239.

 

Usage

 

  • Bridges

To see what other modules are needed, what commands are available and how to get additional help type

module help ericscript

To see what versions of EricScript are available type

module avail ericscript

To use EricScript, include a command like this in your batch script to load the EricScript module:

module load ericscript

Be sure to also load any other modules needed, as listed by the module help ericscript command.

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