DETONATE

DETONATE (DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation) consists of two component packages, RSEM-EVAL and REF-EVAL. Both packages are mainly intended to be used to evaluate de novo transcriptome assemblies, although REF-EVAL can be used to compare sets of any kinds of genomic sequences.

Documentation

 

Usage

  • Bridges

 

To see what other modules are needed, what commands are available and how to get additional help type

module help detonate

 

To see what versions of DETONATE are available type

module avail detonate

 

To use DETONATE, include a command like this in your batch script to load the DETONATE module:

module load detonate

Be sure you also load any other modules needed, as listed by the module help detonate command.

 

User Information

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Send mail to remarks@psc.edu or call the PSC hotline: 412-268-6350.