CNVkit

 

CMVkit is a command line toolkit and Python library  for detecting copy number variants and alterations genome-wide from high-throughput sequencing.

Documentation

 

Usage

To see what versions of CNVkit are available type

module avail cnvkit

To see what other modules are needed, what commands are available and how to get additional help type

module help cnvkit

To use CNVkit, include a command like this in your batch script or interactive session to load the CNVkit module:

module load cnvkit

 

Be sure you also load any other modules needed, as listed by the module help cnvkit command.

 

 

 

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