Bio-Formats

 

Bio-Formats is a library which can read and write image file formats from the life sciences. It facilitates the exchange of image files, primarily microscopy data, between software packages and organizations. Bio-formats can convert proprietary microscopy data to the open data standard OME data model.

Documentation

 

Usage

 

To see what versions of Bio-Formats are available type

module avail bioformats

To see what other modules are needed, what commands are available and how to get additional help type

module help bioformats

To use Bio-Formats, include a command like this in your batch script or interactive session to load the bioformats module:

module load bioformats

Be sure you also load any other modules needed, as listed by the module help bioformats command.

 

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