BCFTOOLS

BCFtools is a library of utilities for variant calling and manipulating VCFs (Variant Call Format) and BCFs (Binary Call Format).

Documentation

• BCFtools web site
• BCFtools Github site
• is there a citation?

Usage

To see what versions of BCFtools are available type

module avail bcftools

To see what other modules are needed, what commands are available and how to get additional help type

module help bcftools

To use BCFtools, include a command like this in your batch script or interactive session to load the bcftools module:

module load bcftools

Be sure you also load any other modules needed, as listed by the module help bcftools command.