BAMTools is a C++ API and command line toolkit for workling with BAM data.
To see what versions of BAMTools are available type
module avail bamtools
To see what other modules are needed, what commands are available and how to get additional help type
module help bamtools
To use BAMTools, include a command like this in your batch script to load the BAMTools module:
module load bamtools
Be sure you also load any other modules needed, as listed by the
module help bamtools command.