MetaPhlAn 2

MetaPhlAn 2 is an update to MetaPhlAn (METAgenomic PHyLogenetic ANalysis),  a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data. 

MetaPhlAn 2 can identify specific strains and track strains across samples for all species.

Documentation

 

Usage

The MetaPhlAn2 dataset is available on Bridges at /pylon5/datasets/community/genomics/metaphlan2./

 

To see what versions of MetaPhlAn2 are available type

module avail metaphlan2

To see what other modules are needed, what commands are available and how to get additional help type

module help metaphlan2

To use MetaPhlAn2, include a command like this in your batch script or interactive session to load the metaphlan2 module:

module load metaphlan2

 

Be sure you also load any other modules needed, as listed by the module help metaphlan2 command.

 

 

 

User Information

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Send mail to remarks@psc.edu or call the PSC hotline: 412-268-6350.