MetaPhlAn 2 is an update to MetaPhlAn (METAgenomic PHyLogenetic ANalysis), a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data.
MetaPhlAn 2 can identify specific strains and track strains across samples for all species.
- MetaPhlAn2 home
- Please cite MetaPhlAn v2.0: Metagenomic microbial community profiling using unique clade-specific marker genes
The MetaPhlAn2 dataset is available on Bridges at /pylon5/datasets/community/genomics/metaphlan2./
To see what versions of MetaPhlAn2 are available type
module avail metaphlan2
To see what other modules are needed, what commands are available and how to get additional help type
module help metaphlan2
To use MetaPhlAn2, include a command like this in your batch script or interactive session to load the metaphlan2 module:
module load metaphlan2
Be sure you also load any other modules needed, as listed by the
module help metaphlan2 command.