National Anton Resource for Biomolecular Simulation

Anton is a special-purpose supercomputer for biomolecular simulation designed and constructed by D. E. Shaw Research (DESRES). PSC is pleased to announce that the third-generation Anton system will become operational at PSC during the last week of March, 2025. This 64-node Anton system replaces and greatly enhances the capabilities of PSC’s second-generation machine.
Anton systems were designed to vastly accelerate the process of molecular dynamics (MD) simulation. With Anton, biomedical researchers can gain valuable insight into the motions and interactions of proteins and other biologically important molecules. The MD research community uses Anton at PSC to investigate significant biological phenomena that due in part to their intrinsically long timescales have been outside the reach of even the most powerful general-purpose supercomputers.
The third-generation Anton is the first and only resource available to the community capable of simulating multiple millions of atoms at speeds of microseconds per day, thus achieving biologically relevant timescales in a timely manner. The ability to simulate millions of atoms in a reasonable timeframe will bring new understanding of large biological systems such as viruses and ribosomes and of phenomena that occur in the millisecond timescale, such as protein folding, aggregation, and membrane deformations.
Anton at PSC is made available without cost by DESRES for non-commercial research use by US universities and other not-for-profit institutions, and is hosted by PSC with operational support from the NIH National Institute of General Medical Sciences.
Contact anton-support@psc.edu with any questions about Anton at PSC.
Using Anton
Documentation on using Anton is available at https://anton-docs.psc.edu/index.html. Accessing this documentation requires an active Anton 3 account and login in with your PSC username and password.
Anton End User Agreement
Review the terms and conditions of the End User Agreement (EUA) for the Use of Anton at PSC.
Accept the terms and conditions of the Anton End User Agreement (EUA).
- Note: Clicking the button below displays a form that collects some basic information about you.
- Check the box that says you have READ the terms and conditions of the Anton EUA.
- Check the box that says you AGREE to the terms and conditions of the Anton EUA.
- Check to verify that you are NOT a robot.
- Click “I AGREE” at the bottom. By clicking this button you are acknowledging that you have read, understood, and agreed to your responsibilities as an Anton user by accepting the terms and conditions of the Anton EUA.
All users, including PIs and group members, who are awarded time on Anton must agree to the terms of the EUA before they receive access to Anton or to the introductory workshop.
Introductory workshop
Due to the special nature of the Anton machine, we are organizing a one-day virtual workshop on April 7, 2025, covering all aspects of running MD simulations on Anton. The workshop is offered by invitation only to the most recent allocations awardees.
Note: The project PI and participants must accept the Anton End User Agreement (EUA) on this page to participate in the workshop. Invited awardees can register for the workshop here:
Apply
Anton is allocated annually via a Request for Proposals with proposals reviewed by a committee convened by the National Research Council at the National Academies of Sciences, Engineering, and Medicine.
To qualify for an allocation on Anton, the principal investigator must be a faculty or staff member at a US academic or not-for-profit research institution.
The Anton RFP period is closed. Be sure to watch for an announcement about the next RFP opportunity next summer.
To help with proposal submissions, we offered two webinars on September 23, 2024:
2:00-3:00 PM (EDT) – Anton 3 Capabilities and Enhanced Sampling Techniques
This webinar introduced the third-generation Anton system to the research community, explaining its capabilities and enhanced sampling techniques.
3:00-4:00 PM (EDT) – How to Write a Successful Anton Proposal
This webinar explained how to prepare a successful application and who qualifies to apply.
Update: The minimum number of atoms has been lowered to 100,000.
Publications
View publications enabled by research that made use of Anton systems at PSC.
Contact us
For questions about Anton at PSC, email anton-support@psc.edu.
Acknowledgement in publications
Acknowledgement for Anton 3
Anton 3 computer time was provided by the Pittsburgh Supercomputing Center (PSC) through Grant 1R24GM154042 from the National Institutes of Health. The Anton 3 machine at PSC is made available by D. E. Shaw Research.
Copy this text
The proper citation for Anton 3 is:
Shaw DE, Adams PJ, Azaria A, Bank JA, Batson B, Bell A, et al. Anton 3: twenty microseconds of molecular dynamics simulation before lunch. SC ’21: The International Conference for High Performance Computing, Networking, Storage and Analysis. ACM; 2021. https://doi.org/10.1145/3458817.3487397Copy this text
Acknowledgement for Anton 2
Anton 2 computer time was provided by the Pittsburgh Supercomputing Center (PSC) through Grant R01GM116961 from the National Institutes of Health. The Anton 2 machine at PSC was made available by D.E. Shaw Research.Copy this text
The proper citation for Anton 2 is:
Shaw, David E., J.P. Grossman, Joseph A. Bank, Brannon Batson, J. Adam Butts, Jack C. Chao, Martin M. Deneroff, et al. “Anton 2: Raising the Bar for Performance and Programmability in a Special-Purpose Molecular Dynamics Supercomputer,” 41–53. IEEE, 2014. doi:10.1109/SC.2014.9. Copy this text
Acknowledgement for Anton 1
Anton computer time was provided by the Pittsburgh Supercomputing Center (PSC) through Grant R01GM116961 from the National Institutes of Health. The Anton machine at PSC was made available by D.E. Shaw Research.Copy this text
The proper citation for Anton 1 is:
Millisecond-Scale Molecular Dynamics Simulations on Anton, D. E. Shaw et al., Proceedings of the ACM/IEEE Conference on Supercomputing (SC09), Portland, Oregon (2009).Copy this text
Anton at PSC is a resource of the NIGMS National and Regional Resources Program. Its operations are supported by the National Institute of General Medical Sciences of the National Institutes of Health under Award Number 1R24GM154042. This content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.