Madrid, Marcela

Akli L, Alameda J, Gordon SI, Madrid M, Rivera L. XSEDE Training: Achieving Access and Inclusion. Proceedings of the XSEDE16 Conference on Diversity, Big Data, and Science at Scale. 2016; (Art 55) doi: 10.1145/2949550.2949586

Ribone SR, Schenfeld EM, Madrid M, Pierini AB, Quevedo MA. Evaluation and synthesis of AZT prodrugs with optimized chemical stabilities: experimental and theoretical analyses. New J. Chem.. 2016; 40:2383; doi: 10.1039/C5NJ03002A

Ribone SR, Leen V, Madrid M, Dehaen W, Daelemans D, Pannecouque C, Briñón MC. Synthesis, biological evaluation and molecular modeling of 4,6-diarylpyrimidines and diarylbenzenes as novel non-nucleosides HIV-1 reverse transcriptase inhibitors. Eur J Med Chem. 2012 Dec;58:485-92. doi: 10.1016/j.ejmech.2012.10.036

Wierzbinski E, de Leon A, Yin X, Balaeff A, Davis KL, Rapireddy S, Venkatramani R, Keinan S, Ly DH, Madrid M, Beratan DN, Achim C, Waldeck DH. Effect of backbone flexibility on charge transfer rates in peptide nucleic acid duplexes. J Am Chem Soc. 2012 Jun 6;134(22):9335-42. doi: 10.1021/ja301677z

Ribone SR, Quevedo MA, Madrid M, Briñón MC. Rational approaches for the design of effective human immunodeficiency virus type 1 nonnucleoside reverse transcriptase inhibitors. J Chem Inf Model. 2011 Jan 24;51(1):130-8. doi: 10.1021/ci1001636

He W, Crawford MJ, Rapireddy S, Madrid M, Gil RR, Ly DH, Achim C. The structure of a gamma-modified peptide nucleic acid duplex. Mol Biosyst. 2010 Sep;6(9):1619-29. doi: 10.1039/c002254c

Yeh JI, Shivachev B, Rapireddy S, Crawford MJ, Gil RR, Du S, Madrid M, Ly DH. Crystal structure of chiral gammaPNA with complementary DNA strand: insights into the stability and specificity of recognition and conformational preorganization. J Am Chem Soc. 2010 Aug 11;132(31):10717-27. doi: 10.1021/ja907225d

Goicochea J, Madrid M, Amon C. Hierarchical Modeling of Heat Transfer in Silicon-Based Electronic Devices. Journal of heat transfer. 2010; 132(10):102401/1

Goicochea J, Madrid M, Amon C. Thermal Properties of Bulk Silicon Based on the Determination of Relaxation Times using Molecular Dynamics. Journal of heat transfer. 2010; 132(10):102401/1

He W, Hatcher E, Balaeff A, Beratan DN, Gil RR, Madrid M, Achim C. Solution structure of a peptide nucleic acid duplex from NMR data: features and limitations. J Am Chem Soc. 2008 Oct 8;130(40):13264-73. doi: 10.1021/ja800652h

 

Marsteller, Jim

C. Jackson, J. Marsteller, A. Starzynski Coddens, V. Welch, Report of the 2015 NSF Cybersecurity Summit for Large Facilities and Cyberinfrastructure. 2015

J. Allar, P. Duda, T. Fleury, C. Jackson, J. Marsteller, S. Sons, Guide to Developing Cybersecurity Programs for NSF Science and Engineering Projects. 2014

C. Jackson, J. Marsteller, V. Welch, Report of the 2014 NSF Cybersecurity Summit for Large Facilities and Cyberinfrastructure Large Facility Cybersecurity Challenges and Responses. 2015

Craig Jackson, James Marsteller, Von Welch, Report of the 2013 NSF Cybersecurity Summit for Cyberinfrastructure and Large Facilities - Designing Cybersecurity Programs in Support of Science. 2014

 

Moses, David

Electrostatic Ring Strain in Crown Ethers, D.J. Moses, J.W. Larson, Abs. Pap. ACS., 179, 27 (1980)

Light Charged Particle Emission and Fission in 238U + 238U Collisions at 1740 MeV.  M. Kaplan, D. J. Moses, D. O. Eriksen, M. Kildir, D. R. G. Logan, M. S. Zisman and R. J. McDonald, Z. Physik A313, 31 (1983)

Multiplicities for Evaporative 4He Emission in Heavy Ion Reactions: Relationships to Spin and Lifetime Expectancy of the Composite Nucleus.   N. N. Ajitanand, J. M. Alexander,  H. Delagrange, E. Duek, D. O. Eriksen, D. Guerreau, M. Kaplan, M. Kildir, L. Kowalski, R. Lacey, D. Logan, D. J. Moses, G. F. Peaslee, L. C. Vaz and M. S. Zisman, Z. Physik A316, 169 (1984)

Mechanisms for Emission of 4He in the Reactions of 334-MeV 40Ar with 238U.  E. Duek, N. N. Ajitanand, J. M. Alexander, D. Logan, M. Kildir, L. Kowalski, L. C. Vaz, D. Guerreau,  M. S. Zisman, M. Kaplan and D. J. Moses, Z. Physik A317, 83 (1984)

Fission Reactions of 469-MeV 56Fe + 238U: Detection of 4He/1H Emission from Pre- and  Post-Fission Sources.  M. Kildir, D. R. G. Logan, D. O. Eriksen, D. J. Moses, M. Kaplan, E. Duek,  L. C. Vaz, N. N. Ajitanand, J. M. Alexander and M. S. Zisman, Z. Physik A317, 291 (1984)

Particle Spectra from Reversed Kinematics: Powerful Probes of Hot Rotating Nuclei.  D. J.  Moses, M. Kaplan, J. M. Alexander, D. Logan, M. Kildir, L. C. Vaz, N. N. Ajitanand, E. Duek and M. S. Zisman, Z. Physik A320, 229 (1985)

Clues to the Shapes of Very Hot Nuclei: Calculated Patterns for Evaporative Emission from Deformed Nuclei.  N. N. Ajitanand, G. La Rana, R. Lacey, D. J. Moses, L. C. Vaz, G. F. Peaslee, D. M. de Castro Rizzo, M. Kaplan, and J. M. Alexander, Phys. Rev. C34, 877 (1986)

Large-Angle Correlations in Evaporative Particle Emission: Shape Distortion? Surface Expansion?  R. Lacey, N. N. Ajitanand, J. M. Alexander, D. M. de Castro Rizzo, G. F. Peaslee,  L. C. Vaz,   G. La Rana, M. Kaplan, D.J. Moses, W. Parker, D. Logan and P. DeYoung, J. Phys. (Paris) Colloq. 4, 289 (1986)

A Need for New Physics in Statistical Models of Nuclear De-excitation.  G. La Rana, D. J. Moses, W. E. Parker, M. Kaplan, D. Logan, R. Lacey, J. M. Alexander, and R. J. Welberry,  Phys. Rev. C35, 373 (1987)

Effects of Nuclear Shape on the Properties of 4He Evaporative Emission.   G. La Rana, R. Lacey, D. J. Moses, N. Ajitanand, M. and and J. M. Alexander, Proc. Int. Symp. Nucl. Fission and Heavy-Ion-Induced Reactions (Rochester, 1986), p. 227, W. U. Schroder, ed., Nucl. Sci. Res. Conf. Ser. Vol. 11, Harwood Academic Publishers (1987)

Light Charged Particle Emission in 485-MeV 56Fe + 197Au Reactions:  Correlations with Heavy Fragments and Relationships to Spin and Lifetime.  D. J. Moses, M. Kaplan, M. Kildir,    D. R. G. Logan, G. La Rana, W. E. Parker, R. Lacey, G. F. Peaslee, J. M. Alexander, N. N. Ajitanand, L. C. Vaz and M. S. Zisman, Nucl. Phys. A465, 339 (1987)

Surprising Properties of the Nuclear Stratosphere Indicated by Energy Spectra and Large-Angle Correlations Between 4He and 1,2,3H or 4He.  R. Lacey, N. N. Ajitanand, J. M. Alexander, D. M. de Castro Rizzo, P. DeYoung, M. Kaplan, L. Kowalski, G. La Rana, D. Logan, D. J. Moses, W. E. Parker, G. F. Peaslee, and L. C. Vaz, Phys. Lett. 191B, 253 (1987).

Nuclear Shape Deformations in 485-MeV 56Fe + 197Au Reactions.  D. J. Moses, M. Kaplan, G. La Rana, W. E. Parker, R. Lacey and J. M. Alexander, Phys. Rev. C36, 422 (1987)

Mechanisms for Light Charged Particle Emission in the Reactions 247- and 337-MeV 40Ar + natAg.  R. Lacey, N. N. Ajitanand, J. M. Alexander, D. M. de Castro Rizzo, G. F. Peaslee, L. C. Vaz,   M. Kaplan, M. Kildir, G. La Rana, D. J. Moses, W. E. Parker, D. Logan, M. S. Zisman, P. DeYoung, and L. Kowalski, Phys. Rev. C37, 2540 (1988)

Large-Angle Correlations Between 4He and 1,2,3H or 4He in the Reactions 247 and 337-MeV 40Ar + natAg: Surprising Properties of the Nuclear Stratosphere.  R. Lacey, N. N. Ajitanand, J. M. Alexander, D. M. de Castro Rizzo, G. F. Peaslee, L. C. Vaz, M. Kaplan, M. Kildir, G. La Rana, D. J. Moses, W. E. Parker, D. Logan, M. S. Zisman, P. DeYoung, and L. Kowalski, Phys. Rev. C37, 2561 (1988)

Are Hot Composite Nuclei Significantly Different from Cold Nuclei?  M. Kaplan, W. E. Parker,  D. J. Moses, G. La Rana, R. J. Welberry, D. Logan, R. Lacey, J. M. Alexander, D. M. de Castro Rizzo, and P. DeYoung, Proceedings of the Texas A&M Symposium on Hot Nuclei (College Station, 1987), p. 115, S. Shlomo, R. P. Schmitt, J. B. Natowitz, eds., World Scientific Publishing Co. (1988)

Sources of Light Charged Particle Emission in the Reaction 480-MeV 56Fe + natAg.  G. F.  Peaslee, N. N. Ajitanand, J. M. Alexander, D. Guerreau, R. Lacey, L. C. Vaz, M. Kaplan, M. Kildir, D. J. Moses, D. Logan, and M. S. Zisman, Phys. Rev. C38, 1730 (1988)

Particle-Particle Coincidence Measurements for 1,2,3H and 4He in the Reaction 480-MeV 56Fe + natAg.  G. F. Peaslee, N. N. Ajitanand, J. M. Alexander, R. Lacey, L. C. Vaz, M. Kaplan, M. Kildir, D. J. Moses, D. Logan, and M. S. Zisman, Phys. Rev. C39, 488 (1989)

Three Paths for Intermediate-Mass Fragment Formation at a Near-Onset Excitation Energy of 1.3-MeV/Nucleon.  J. Boger, S. Kox, G. Auger, J. M. Alexander, A. Narayanan, M. A. McMahan, D. J. Moses, M. Kaplan, and G. P. Gilfoyle Phys. Rev. C41, R801 (1990)

Charged Particle Evaporation from Hot Composite Nuclei: Evidence Over a Broad Z Range for Distortions from Cold Nuclear Profiles.  W. E. Parker, M. Kaplan, D. J. Moses, G. La Rana, D. Logan, R. Lacey, J. M. Alexander, D. M. de Castro Rizzo, P. DeYoung, R. J. Welberry, and  J. Boger, Phys. Rev. C44, 774 (1991)

De-Excitation of Hot, High-Spin Nuclei By Particle Emission and Fission.  M. Kaplan, W. E. Parker, D. J. Moses, E. Vardaci, J. M. Alexander, J. Boger, R. Lacey, and N. Carjan, Advances  in Nuclear Dynamics (Key West, Fla., 1991), p. 8, W. Bauer, J. Kapusta, eds., World Scientific Publishing Co. (1991)

The Role of Reversed Kinematics and Double Kinematic Solutions in Nuclear Reactions Studies.  M. Kaplan, W. E. Parker, D. J. Moses, R. Lacey, and J. M. Alexander, Nucl. Inst. Methods in Phys. Res. A327, 551 (1993)

Mechanisms of Light-Charged-Particle Emission in the Matched Reactions 905 and 1030 MeV 121Sb + 27Al and 550 and 750 MeV 86Kr + 63Cu.  W. E. Parker, M. Kaplan, D. J. Moses, J. M. Alexander, J. T. Boger, R. A. Lacey, and D. M. de Castro Rizzo, Nucl. Phys. A568, 633 (1994)

Light Charged Particle and Intermediate Mass Fragment Emission in the Reaction 640 MeV 86Kr + 63Cu.  J. Boger, J. M. Alexander, G. Auger, A. Elmaani, S. Kox, R. A. Lacey, A. Narayanan, M. Kaplan, D. J. Moses, M. A. McMahan, P. A. DeYoung, C. J. Gelderloos, and G. Gilfoyle, Phys. Rev. C49, 1576 (1994)

Coincidence Correlations Between Light Charged Particles in the Matched Reactions 905 and 1030 MeV 121Sb + 27Al and 550 and 750 MeV 86Kr + 63Cu.  W. E. Parker, M. Kaplan, D. J. Moses, J. M. Alexander, R. A. Lacey, D. M. de Castro Rizzo, J. Boger, A. Narayanan, G. F. Peaslee, and D. G. Popescu, Nucl. Phys. A594, 1 (1995)

Studies of light charged particle emission from fission and ER reactions in the system 344 MeV 28Si + 121Sb 149Tb (E* = 240 MeV).  Morton Kaplan, Craig J. Copi, Paul A. DeYoung, Gerard J. Gilfoyle, Paul J. Karol, David J. Moses, Winifred E. Parker, K. Ernst Rehm, John Sarafa, and Emanuele Vardaci, Nucl. Phys. A686, 109 (2001)

 

Rapier, Chris

Rapier, Chris, and Benjamin Bennett. High speed bulk data transfer using the SSH protocol. Proceedings of the 15th ACM Mardi Gras conference. ACM, 2008 

Rapier, Chris. High speed bulk data transfer on the Grid using the SSH protocol. Proceedings of Gridnets (2007): 17-19

 

Roskies, Ralph

An Overview of the XSEDE Extended Collaborative Support Program with N. Wilkins-Diehr, N and S Sanielevici, J Alameda, J Cazes, L Crosby, M Pierce, R Roskies. High Performance Computer Applications 6th International Conference, ISUM 2015, Mexico City, Mexico, March 9-13, 2015, Revised Selected Papers Gitler, Isidoro, Klapp, Jaime (Eds.) Springer International Publishing. ISBN 978-3-319-32243-8, 3-13, 2016. 10.1007/978-3-319-32243-8

John Towns, Timothy Cockerill, Maytal Dahan, Ian Foster, Kelly Gaither, Andrew Grimshaw, Victor Hazlewood, Scott Lathrop, Dave Lifka, Gregory D. Peterson, Ralph Roskies, J. Ray Scott, Nancy Wilkins-Diehr, XSEDE: Accelerating Scientific Discovery, Computing in Science & Engineering, vol.16, no. 5, pp. 62-74, Sept.-Oct. 2014, doi:10.1109/MCSE.2014.80S

Stewart, Craig A.; Roskies, Ralph; Knepper, Richard; Moore, Richard L.; Whitt, Justin; Cockerill, Timothy M. , XSEDE Value Added, Cost Avoidance, and Return on Investment,  IUScholarWorks, http://dx.doi.org/10.1145/2792745.2792775 (won best paper at XSEDE15).

Nystrom, N. A., Levine, M. J., Roskies, R. Z., and Scott, J. R. 2015. Bridges: A Uniquely Flexible HPC Resource for New Communities and Data Analytics. In Proceedings of the 2015 Annual Conference on Extreme Science and Engineering Discovery Environment (St. Louis, MO, July 26-30, 2015). XSEDE15. ACM, New York, NY, USA. DOI=http://dx.doi.org/10.1145/2792745.2792775.

Catlett, C, R. Roskies et al, TeraGrid: Analysis of Organization, System Architecture, and Middleware Enabling New Types of Applications. In: Advances in Parallel Computing Volume 16, 2008: High Performance Computing and Grids in Action. L. Grandinetti, ed.  IOS Press, Amsterdam, The Netherlands, 2008. Available from: http://hdl.handle.net/2022/14524

 

Sanielevici, Sergiu

An Overview of the XSEDE Extended Collaborative Support Program with N. Wilkins-Diehr, N and S Sanielevici, J Alameda, J Cazes, L Crosby, M Pierce, R Roskies. High Performance Computer Applications 6th International Conference, ISUM 2015, Mexico City, Mexico, March 9-13, 2015, Revised Selected Papers Gitler, Isidoro, Klapp, Jaime (Eds.) Springer International Publishing. ISBN 978-3-319-32243-8, 3-13, 2016. 10.1007/978-3-319-32243-8.

 

James Taylor, Anton Nekrutenko, Nate Coraor, Philip D. Blood, Alex Ropelewski, Zhihui Zhang, Josephine Palencia, Sergiu Sanielevici, Jared Yanovich, and Robert Budden. 2013. A sustainable national gateway for biological computation. In Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery (XSEDE '13). ACM, New York, NY, USA, Article 32 , 3 pages. DOI=http://dx.doi.org/10.1145/2484762.2484817

Scott, J. Ray

Uma R. Chandran, Olga P. Medvedeva, M. Michael Barmada, Philip D. Blood, Anish Chakka,Soumya Luthra, Antonio Ferreira, Kim F. Wong, Adrian V. Lee, Zhihui Zhang, Robert Budden, J. Ray Scott, Annerose Berndt, Jeremy M. Berg, Rebecca S. Jacobson. TCGA Expedition: A Data Acquisition and Management System for TCGA Data, PLOS One, October 2016 DOI:10.1371/journal.pone.0165395

Towns, J., Cockerill, T., Dahan, M., Foster, I., Gaither, K., Grimshaw, A., Hazlewood, V., Lathrop, S., Lifka, D., Peterson, G. D., Roskies, R., Scott, J. R., WilkinsDiehr, N. XSEDE: Accelerating Scientific Discovery in Computing in Science & Engineering, September/October 2014

 

Underwood, Richard

Richard Underwood. 2017. Building Bridges: The System Administration Tools and Techniques Used to Deploy Bridges. In Proceedings of the Practice and Experience in Advanced Research Computing 2017 on Sustainability, Success and and Impact (PEARC17). ACM, New York, NY, USA, Article 5, 5 pages. DOI: https://doi.org/10.1145/3093338.3093339

 

Urbanic, John

Y. Hongfeng, T. Tu, J. Bielak, O. Ghattas, J. Lopez, K. Ma, D. O’Hallaron., L. Ramirez-Guzman, N. Stone, R. Taborda, J. Urbanic 2006.  Analytics challenge- Remote runtime steering of integrated terascale simulation and visualization.  Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing

R. Taborda, J. Bielak,  D. O’Hallaron., L. Ramirez-Guzman, J. Lopez, J. Urbanic 2007.  The ShakeOut and its Effects in the Los Angeles and Oxnard Areas.  Conference: Annual Meeting, American Geophysical Union

J. Bielak, R. Graves, K. Olsen, R. Taborda, L. Ramirez, S. Day, G Ely, D Toren, T Jordan, P Maechling, J. Urbanic, Y. Cui, G. Juve. 2010.  The ShakeOut earthquake scenario: Verification of three simulation sets.  Geophysical Journal International 180:375-404

Ebcioglu, K., Sarkar, V., El-Ghazawi, T., Urbanic, J. 2006. An experiment in measuring the productivity of three parallel programming languages. Proceedings of the Third Workshop on Productivity and Performance in High-End Computing: 30-36

S. Koric, G. Arnold, M. Gajbe, J. Urbanic. 2014.  XSEDE OpenACC workshop enables Blue Waters Researchers to Accelerate Key Algorithms.  Conference Paper XSEDE '14

 

Wang, Yang

R. E. Stoller, A. Tamm, L. K. Béland, G. D. Samolyuk, G. M. Stocks, A. Caro, L. V. Slipchenko, Yu. N. Osetsky, A. Aabloo, M. Klintenberg, and Y. Wang, The Impact of Short-range Forces on Defect Production from High-energy Collisions, J. Chem. Theory Comput., 12, 2871 (2016). DOI:10.1021/acs.jctc.5b01194

Fuyang Tian, Dongping Wang, Jiang Shen, Yang Wang, An ab initio investigation of ideal tensile and shear strength of TiVNbMo high-entropy alloy, Materials Letters, 166, 271 (2016). DOI:10.1016/j.matlet.2015.12.064

Xianglin Liu, Yang Wang, Markus Eisenbach, G. Malcolm Stocks, A full-potential approach to the relativistic single-site Green's function, J. Phys.: Condens. Matter 28, 355501 (2016). doi:10.1088/0953-8984/28/35/355501

Fuyang Tian, Yang Wang, Douglas L. Irving, Levente Vitos, Applications of Coherent Potential Approximation to HEAs, Chapter 9, High-Entropy Alloys – Fundamentals and Applications, Michael C. Gao, Jien-Wen Yeh, Peter K. Liaw, Yong Zhang, Eds. Springer, 2016.

M. Claudia Troparevsky, James R. Morris, Markus Daene, Yang Wang, Andrew R. Lupini, and G. Malcolm Stocks, Beyond Atomic Sizes and Hume-Rothery Rules: Understanding and Predicting High-Entropy Alloys, JOM, 67, 2350 (2015). DOI:10.1007/s11837-015-1594-2

Yang Wang, G.M. Stocks, J.S. Faulkner, The single-site Green's function and Krein's theorem, J. Phys.: Condens. Matter 26, 274208 (2014). DOI:10.1088/0953-8984/26/27/274208

A. Rusanu, G.M. Stocks, Yang Wang, J.S. Faulkner, Green's functions in full-potential multiple-scattering theory, Phys. Rev. B 84, 035102 (2011). doi:10.1103/PhysRevB.84.035102

K. Odbadrakh, A. Rusanu, G. M. Stocks, G. D. Samolyuk, M. Eisenbach, Yang Wang, and D. M. Nicholson, Calculated electronic and magnetic structure of screw dislocations in alpha iron, J. Appl. Phys. 109, 07E159 (2011). DOI: 10.1063/1.3562217

Yang Wang, D. M. C. Nicholson, G. M. Stocks, Aurelian Rusanu, Markus Eisenbach, and R. E. Stoller, A study of radiation damage effects on the magnetic structure of bulk Iron, J. Appl. Phys. 109, 07E120 (2011). DOI: 10.1063/1.3553937

Yang Wang, D.M.C. Nicholson, G.M. Stocks, Aurelian Rusanu, Markus Eisenbach, and R. E. Stoller, A Theoretical Study of the Magnetic Structure of Bulk Iron with Radiation Defects, MRS Proceedings 1363, mrss11-1363-rr01-07 (2011). DOI: 10.1557/opl.2011.1283

Yang Wang, Stocks G.M., Rusanu A., Nicholson D.M.C., Eisenbach M., Qiming Zhang, Liu J.P., Electronic and Magnetic Structure of L10-FePt Nanoparticle Embedded in FePt Random Alloy, IEEE Transactions on Magnetics, 43, 3103 (2007). doi:10.1109/TMAG.2007.893856

 

Welling, Joel

Mark R. Lovell, Jamie E. Pardini, Joel Welling, Michael W. Collins, Jennifer Bakal, Nicole Lazar, Rebecca Roush, William F. Eddy, and James T. Becker. Functional brain abnormalities are related to clinical recovery and time to return-to-play in athletes. Neurosurgery, 61(2):352– 360, August 2007.

Dirk Bartz, Bruno Raffin, Han wei Shen (editors, Hongfeng Yu, Kwan liu Ma, and Joel Welling. I/o strategies for parallel rendering of large time-varying volume data. 2008.

Jamie E. Pardini, Dustin A Pardini, James T. Becker, Kathryn L. Dunfee, William F. Eddy, Mark R. Lovell, and Joel S. Welling. Post-concussive symptoms are associated with compensatory cortical recruitment during a working memory task. Neurosurgery, 67(4):1020–1028, October 2010.

BY Lee, TM Assi, K Rookkapan, DL Connor, J Rajgopal, V Sornsrivichai, ST Brown, BA Welling, Jand Norman, S Chen, RR Bailey, AE Wiringa, AR Wateska, A Jana, WA Van Panhuis, and DS Burke. Replacing the measles multi-dose vaccine presentation with the single-dose presentation in Thailand. Vaccine, 29(21):3811–3817, 2011.

TM Assi, ST Brown, A Djibo, BA Norman, J Rajgopal, JS Welling, SI Chen, RR Bailey, S Kone, H Kenea, DL Connor, AR Wateska, A Jana, SR Wisniewski, WG Van Panhuis, DS Burke, and BY Lee. Impact of changing the measles vaccine vial size on niger’s vaccine supply chain: a computational model. BMC Public Health, 11:425, June 2011.

BY Lee, TM Assi, K Rookkapan, AR Wateska, J Rajgopal, V Sornsrivichai, SI Chen, ST Brown, J Welling, BA Norman, DL Connor, RR Bailey, A Jana, WG Van Panhuis, and DS Burke. Maintaining vaccine delivery following the introduction of the rotavirus and pneumococcal vaccines in Thailand. PLoS One, 6(9):e24673, 2011.

BY Lee, T Assi, J Rajgopal, BA Norman, S Chen, ST Brown, RR Bailey, S Kone, H Kenea, J Welling, DL Connor, AR Wateska, A Jana, AE Wiringa, WA Van Panhuis, and DS Burke. Impact of introducing the pneumococcal and rotavirus vaccines into the routine immunization program in Niger. Am J Public Health, 102(2):269–76, 2011.

TM Assi, K Rookkapan, J Rajgopal, V Sornsrivichai, ST Brown, JS Welling, BA Norman, DL Connor, SI Chen, RB Slayton, Y Laosiritaworn, AR Wateska, SR Wisniewski, and Lee BY. How influenza vaccination policy may affect vaccine logistics. Vaccine, 30(30):4517–23, June 2012.

BY Lee, BE Cakaouros, TM Assi, DL Connor, J Welling, S Kone, A Djibo, AR Wateska, L Pierre, and ST Brown. The impact of making vaccines thermostable in niger’s vaccine supply chain. Vaccine, 30(38):5637, 2012.

L. A. Haidari, D. L. Connor, A. R. Wateska, S. T. Brown, L. E. Mueller, B. A. Norman, M. M. Schmitz, P. Paul, J. Rajgopal, J. S. Welling, J. Leonard, E. G. Claypool, Y. T. Weng, S. I. Chen, and B. Y. Lee. Only adding stationary storage to vaccine supply chains may create and worsen transport bottlenecks. J Public Health Manag Pract, 19 Suppl 2:S65–67, 2013.

Leila A. Haidari, Diana L. Connor, Angela R. Wateska, Shawn T. Brown, Leslie E. Mueller, Bryan A. Norman, Michelle M. Schmitz, Proma Paul, Jayant Rajgopal, Joel S. Welling, Jim Leonard, Sheng-I Chen, and Bruce Y. Lee. Augmenting transport versus increasing cold storage to improve vaccine supply chains. PLoS ONE, 8(5):1–7, 05 2013.

Bruce Y. Lee, Diana L. Connor, Angela R. Wateska, Bryan A. Norman, Jayant Rajgopal, Brigid E. Cakouros, Sheng-I. Chen, Erin G. Claypool, Leila A. Haidari, Veena Karir, Jim Leonard, Leslie E. Mueller, Proma Paul, Michelle M. Schmitz, Joel S. Welling, Yu-Ting Weng, and Shawn T. Brown. Landscaping the structures of GAVI country vaccine supply chains and testing the effects of radical redesign. Vaccine, 33(36):4451 – 4458, 2015.

Leslie E. Mueller, Leila A. Haidari, Angela R. Wateska, Roslyn J. Phillips, Michelle M. Schmitz, Diana L. Connor, Bryan Norman, Shawn Brown, Joel Welling, and Bruce Y. Lee. The impact of implementing a demand forecasting system into a low-income country’s supply chain. Vaccine, 34(32):3663–3669, 2016.

 

Wetzel, Art

Wetzel AW, Bakal J, Dittrich M, Hildebrand DGC, Morgan JL, Lichtman JW, Registering large volume serial-section electron microscopy image sets for neural circuit reconstruction using FFT signal whitening, 45th IEEE Applied Imagery Pattern Recognition Workshop, Cosmos Club, Washington, D.C.  October 18-20, 2016

Wetzel AW, Bakal J, Dittrich M. A Virtual File System for On-Demand Processing of Multidimensional Datasets. Proceedings of the XSEDE16 Conference on Diversity, Big Data, and Science at Scale; 2016 July 17; Miami, FL, USA

Wetzel A, Badea C, Pomerantz S, Nave D, Mistry N, et al. Measurement and modeling of 4D live mouse heart volumes from CT time series. Videometrics lX Proc. of SPIE-US&T Electronic Imaging. 2007 January; SPIE Vol 6491(64910J-1-64910J-7)

 

Zhihui Zhang

James Taylor, Anton Nekrutenko, Nate Coraor, Philip D. Blood, Alex Ropelewski, Zhihui Zhang, Josephine Palencia, Sergiu Sanielevici, Jared Yanovich, and Robert Budden. 2013. A sustainable national gateway for biological computation. In Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery (XSEDE '13). ACM, New York, NY, USA, , Article 32 , 3 pages. DOI=http://dx.doi.org/10.1145/2484762.2484817

Paul Nowoczynski, Jason Sommerfield, Jared Yanovich, J. Ray Scott, Zhihui Zhang, and Michael Levine. 2012. The Data Supercell. In Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyond (XSEDE '12). ACM, New York, NY, USA, , Article 13 , 11 pages. DOI=10.1145/2335755.2335805. http://doi.acm.org/10.1145/2335755.2335805

Zhihui Zhang and Kanad Ghose. 2007. hFS: a hybrid file system prototype for improving small file and metadata performance. SIGOPS Oper. Syst. Rev. 41, 3 (March 2007), 175-187. DOI=http://dx.doi.org/10.1145/1272998.1273016. Also in Proceedings of the 2nd ACM SIGOPS/EuroSys European Conference on Computer Systems 2007 (EuroSys '07). ACM, New York, NY, USA, 175-187. DOI=http://dx.doi.org/10.1145/1272996.1273016