RNAview

The RNAView program generates 2-dimensional displays of RNA/DNA secondary structures with tertiary interactions.

Documentation

• RNAview home
• Citation: Yang, H., Jossinet, F., Leontis, N., Chen, L., Westbrook, J., Berman, H.M., Westhof, E. (2003). Tools for the automatic identification and classification of RNA base pairs. Nucleic Acids Research 31.13: 3450-3460.

Usage on Bridges-2

To see what versions of RNAview are available and if there is more than one, which is the default, along with some help, type

module spider rnaview

To use RNAview, include a command like this in your batch script or interactive session to load the RNAview module: (note ‘module load’ is case-sensitive):

module load rnaview