NGSCheckMate

NGSCheckMate is a software package for identifying next generation sequencing (NGS) data files from the same individual. It analyzes various types of NGS data files including (but not limited to) whole genome sequencing (WGS), whole exome sequencing (WES), RNA-seq, ChIP-seq, and targeted sequencing of various depths.

Documentation

• NGSCheckMate home
• Citation: Nucleic Acids Research, Volume 45, Issue 11, 20 June 2017, Pages e103, https://doi.org/10.1093/nar/gkx193

Usage

To see what versions of NGSCheckMate are available type

module avail ngscheckmate

To see what other modules are needed, what commands are available and how to get additional help type

module help  ngscheckmate

To use NGSCheckMate, include a command like this in your batch script or interactive session to load the ngscheckmate module:

module load ngscheckmate

Be sure you also load any other modules needed, as listed by the module help ngscheckmate command.