Kraken is a taxonomic sequence classifier that assigns taxonomic labels to short DNA reads.
- Kraken home
Reference: Wood DE, Salzberg SL: Kraken: ultrafast metagenomic sequence classification using exact alignments.Genome Biology 2014, 15:R46
To see what versions of Kraken are available type
module avail kraken
To see what other modules are needed, what commands are available and how to get additional help type
module help kraken
To use Kraken, include a command like this in your batch script or interactive session to load the Kraken module:
module load kraken
Be sure you also load any other modules needed, as listed by the
module help kraken command.