KRAKEN

Kraken is a taxonomic sequence classifier that assigns taxonomic labels to short DNA reads.

Documentation

• Kraken home

• Reference: Wood DE, Salzberg SL: Kraken: ultrafast metagenomic sequence classification using exact alignments.Genome Biology 2014, 15:R46

Usage

To see what versions of Kraken are available type

module avail kraken

To see what other modules are needed, what commands are available and how to get additional help type

module help kraken

To use Kraken, include a command like this in your batch script or interactive session to load the Kraken module:

module load kraken

Be sure you also load any other modules needed, as listed by the module help kraken command.