EricScript is a computational framework for the discovery of gene fusions in paired end RNA-seq data. It is able to generate synthetic gene fusions by using the EricScript simulator and calculate a number of statistical measures for evaluating gene fusion detection methods' performance with EricScript CalcStats.
- EricScript web site
- Benelli M, Pescucci C, Marseglia G, Severgnini M, Torricelli F, Magi A. Discovering chimeric transcripts in paired-end RNA-seq data by using EricScript. Bioinformatics. 2012; 28(24): 3232-3239.
Usage on Bridges
To see what other modules are needed, what commands are available and how to get additional help type
module help ericscript
To see what versions of EricScript are available type
module avail ericscript
To use EricScript, include a command like this in your batch script or interactive session to load the EricScript module:
module load ericscript
Be sure to also load any other modules needed, as listed by the
module help ericscript command.