Bedops is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. Tasks can be easily split by chromosome for distributing whole-genome analyses across a computational cluster.



Usage on Bridges


To see what other modules are needed, what commands are available and how to get additional help type

module help bedops


To see what versions of Bedops are available type

module avail bedops


To use Bedops, include a command like this in your batch script or interactive session to load the Bedops module:

module load bedops

Be sure you also load any other modules needed, as listed by the module help bedops command.


See more help on Bedops