BAMTools is a C++ API and command line toolkit for workling with BAM data.   



Usage on Bridges


To see what versions of BAMTools are available type

module avail bamtools

To see what other modules are needed, what commands are available and how to get additional help type

module help  bamtools

To use BAMTools, include a command like this in your batch script or interactive session to load the BAMTools module:

module load bamtools


Be sure you also load any other modules needed, as listed by the module help bamtools command.





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