Pittsburgh Supercomputing Center 

Advancing the state-of-the-art in high-performance computing,
communications and data analytics.

ALLPATHS-LG Examples

For Blacklight

Download blacklight example files here

Files include:

  • allpaths.job, the job script
  • in_groups.csv, input, location information for the files to be converted
  • in_libs.csv, input, library information for the files to be converted
  • final.assembly.efasta, output, flattened and folded assembly in 'enhanced' fasta format
  • final.assembly.fasta, output, flattened and folded assembly in fasta format
  • allpaths.out, standard output and error from the job

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